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GST & TDS Interest and Late Fee Calculator

Work out GST interest on the cash paid late under Rule 88B, or TDS interest for late deduction and payment by month.

Reviewed by CA Apurav GargUpdated Calculated in your browser; copied links include your figures

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Example values — replace with yours.
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Which return is late?

GSTR-1 and GSTR-3B share the same late fee; GSTR-9 has its own.

Includes marketplace TCS you have accepted. Only cash that stayed in the ledger the whole time counts.

Aggregate turnover in the previous year

Sets the late fee cap: ₹2,000, ₹5,000, ₹10,000. A nil return is capped at ₹500.

ITC wrongly availed and used (section 50(3))

Leave blank if none.

Interest runs only on the part used: availed less the lowest balance (Rule 88B(3)).

Your result

GST interest and late fee

₹2,979.45

Interest is on the ₹1,00,000.00 paid late in cash, not the full ₹8,00,000.00: Rule 88B keeps ₹10,356.16 of interest off the bill, thanks to the credit and the cash (including marketplace TCS credited) in your ledgers on the due date.

Interest
₹1,479
Late fee
₹1,500
Saved by Rule 88B
₹10,356
How it is worked out
PartAmount
Paid late in cash (liability − ITC − cash on hand)₹1,00,000.00
Interest at 18% a year, section 50(1)₹1,479.45
GSTR-3B late fee: ₹50 a day, up to ₹5,000₹1,500.00
Total₹2,979.45

What this tells you

A GSTR-3B filed late, or TDS deducted or paid late, costs interest and a late fee. On GST, interest is charged only on the part of the liability paid late in cash, so the credit and cash already on hand make a real difference.

Choose GST or TDS, enter the amounts and dates, and see the interest and late fee with each part worked out.

Assumptions used

  • GST: one GSTIN and one month. The days late are the days after the GSTR-3B due date.
  • GST: the cash balance counts only if it stayed in the cash ledger from the due date to filing.
  • GST late fee: the cap is chosen from the previous year’s aggregate turnover; a nil liability uses the nil-return rate and cap. GSTR-1 uses the same fee as GSTR-3B.
  • GSTR-9: ₹50, ₹100 or ₹200 a day by aggregate turnover for the year, capped at 0.04%, 0.04% or 0.5% of turnover in the State.
  • Section 50(3): interest runs only on the ITC actually used — the amount availed less the lowest credit ledger balance in the period (Rule 88B(3)).
  • Marketplace TCS you have accepted sits in the cash ledger, so it counts as cash on hand for Rule 88B.
  • TDS: one deduction. Months are calendar months, a part month counted in full.
  • Interest is an estimate; the GST portal and TRACES work out what is actually charged.
Legal references and sources
GST interest and GSTR-3B late fee
Section 50(1), Section 50(3) and Section 47, CGST Act, 2017 read with Rule 88B, CGST Rules, 2017 and Notification No. 13/2017–Central Tax as amended by Notification No. 9/2022–Central Tax dated 5 July 2022.
Last verified 27 Oct 2026
TDS interest and return late fee
Section 398(3)(a) and Section 397(3)(f), Income-tax Act, 2025 (for tax year 2026-27 onwards); Section 201(1A) and Section 234E, Income-tax Act, 1961 (for FY 2025-26) read with Rule 119A, Income-tax Rules, 1962.
Last verified 27 Oct 2026
GSTR-9 annual return late fee
Section 47(2), CGST Act, 2017, as waived in part by Notification No. 07/2023–Central Tax dated 31 March 2023 for GSTR-9 from 2022-23: aggregate turnover up to ₹5 crore ₹50 a day (₹25 CGST + ₹25 SGST), capped at 0.04% of turnover in the State or Union territory; ₹5 crore to ₹20 crore ₹100 a day, capped at 0.04%; above ₹20 crore ₹200 a day, capped at 0.5%. Verified as on 2 November 2026.
Effective from 1 Apr 2023 · Last verified 2 Nov 2026 · Official source

How this is calculated

  1. GST paid late in cash = liability − ITC in the credit ledger − cash in the cash ledger, never below zero.
  2. Section 50(1) interest = that amount × 18% × days late ÷ 365. Without Rule 88B it would be on the full liability.
  3. ITC wrongly used = ITC wrongly availed − the lowest credit ledger balance meanwhile, never below zero.
  4. Section 50(3) interest = ITC wrongly used × 18% × days ÷ 365.
  5. GSTR-3B or GSTR-1 late fee = days late × ₹50 (₹20 for a nil return), up to the turnover cap.
  6. GSTR-9 late fee = days late × ₹50, ₹100 or ₹200 a day, up to 0.04%, 0.04% or 0.5% of turnover in the State.
  7. TDS late deduction = TDS × 1% × months from deductible to deducted.
  8. TDS late payment (if paid after the due date) = TDS × 1.5% × months from deducted to paid.
  9. TDS return late fee = days late × ₹200, up to the TDS.

Worked examples

GST: ₹8,00,000 liability, 30 days late

ITC ₹6,50,000 and cash ₹50,000 on hand, so ₹1,00,000.00 is paid late in cash. Interest ₹1,479.45 (on the full liability it would be ₹11,835.62, so Rule 88B saves ₹10,356.16). Late fee ₹1,500.00. Total ₹2,979.45.

TDS: ₹10,000 deducted and paid late

Deductible 10 Apr 2026, deducted 25 May 2026: 2 months, ₹200.00. Due by 7 Jun 2026, paid 8 Jul 2026: 3 months from deduction, ₹450.00. Total ₹650.00.

Credit used, one day late on TDS, and a late GSTR-9

GST: ₹2,50,000 liability, 30 days late, with ₹50,000 of accepted marketplace TCS in the cash ledger: interest ₹2,958.90, and Rule 88B saves ₹739.73. ₹1,00,000 of ITC wrongly availed, but the credit ledger never fell below ₹40,000, so only ₹60,000.00 was used: section 50(3) interest ₹887.67 for 30 days.

TDS: ₹1,00,000 deducted on 25 May 2026 and paid on 8 Jun 2026, one day after the due date of 7 Jun 2026. A part month counts in full, so that is 2 months: ₹3,000.00.

GSTR-9: 40 days late, aggregate turnover in the lowest band and ₹20,00,000 turnover in the State: the cap of ₹800.00 applies, so the late fee is ₹800.00.

Our Tax Audit & Notices work covers replies to GST and TDS demands, including interest and late fee computations.

Questions sellers ask

Is GST interest charged on the full liability or only the cash part?

Only on the part paid late in cash. Under Rule 88B, interest under section 50(1) is on the tax paid by debiting the electronic cash ledger after the due date. Credit already in the credit ledger, and cash that sat in the cash ledger from the due date, do not attract interest.

When does section 50(3) interest apply?

When ITC is wrongly availed and also utilised. Interest at 18% a year runs from the date of utilisation to the date it is reversed or paid. Credit that was availed but never used does not attract it.

What is the GSTR-3B late fee?

₹50 a day (CGST and SGST together), or ₹20 a day for a nil return, up to a cap that depends on the previous year’s aggregate turnover.

How is TDS interest counted?

By month, and a part of a month counts as a full month. Late deduction: 1% a month from the date tax was deductible to the date it was deducted. Late payment: 1.5% a month from the date it was deducted to the date it was paid.

When is TDS due to be paid?

By day 7 of the next month, except that TDS deducted in March is due by 30 April.

What is the late fee for a TDS return?

₹200 a day from the due date until the return is filed, never more than the TDS in the return.

Want our team to look at these numbers alongside your books?

We keep books, file GST and TDS returns and prepare monthly MIS for D2C and marketplace sellers. Share your figures and we will walk you through what we find.

Disclaimer

An estimate for general information only, based on the amounts and dates you enter. The GST portal and TRACES compute the interest and fees actually charged; this is not advice on your GST or TDS position.

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